| Pretrained Transformers for Seizure Detection | Panchavati S, Vander Dussen S, Semwal H, Ali A, Chen J, Li H, Arnold CW, Speier W | IEEE International Conference on Acoustics, Speech and Signal Processing | 2023 | |
| Machine Learning Approaches to Classify Self-Reported Rheumatoid Arthritis Health Scores Using Activity Tracker Data: Longitudinal Observational Study | Rao K, Speier W, Meng Y, Wang J, Ramesh N, Xie F, Su Y, Nowell WB, Curtis JR, Arnold CW | JMIR Formative Research | 2023 | |
| Identifying Acute Ischemic Stroke Patients within the Thrombolytic Treatment Window using Deep Learning | Polson JS*, Zhang H*, Nael K, Salamon N, Yoo B, El-Saden S, Starkman S, Kim N, Kang D, Speier W, Arnold CW | Journal of Neuroimaging | 2022 | |
| Synthesizing MR Image Contrast Enhancement Using 3D High-resolution ConvNets | Chen C, Raymond C, Speier W, Jin X, Cloughesy T, Enzmann D, Ellingson B, Arnold CW | IEEE Transactions on Biomedical Engineering | 2022 | |
| Attention-guided Prostate Lesion Localization and Grade Group Classification with Multiple Instance Learning | Redekop E, Sarma KVS, Kinnaird A, Sisk A, Raman S, Marks L, Speier W, Arnold CW | Medical Imaging with Deep Learning (MIDL) Annual Meeting | 2022 | |
| An Electronic Health Record-integrated Tumor Board Application to Save Preparation Time and Reduce Errors | Nobori A, Jumniensuk C, Chen X, Enzmann D, Dry S, Nelson S, Arnold CW | JCO Clinical Cancer Informatics | 2022 | |
| PathAL: An Active Learning Framework for Histopathology Image Analysis | Li W, Li J, Wang Z, Polson J, Sisk A, Sajed D, Speier W, Arnold CW | IEEE Transactions on Medical Imaging | 2022 | |
| High Resolution Histopathology Image Generation and Segmentation through Adversarial Training | Li W, Li J, Polson JS, Wang Z, Speier W, Arnold CW | Medical Image Analysis | 2022 |
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| Hierarchical Graph Pathomic Network for Progression Free Survival Prediction | Wang Z*, Li J*, Pan Z, Li W, Sisk A, Ye H, Speier W, Arnold CW | International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) | 2021 | |
| Attention-Guided Discriminative Region Localization and Label Distribution Learning for Bone Age Assessment | Chen C, Chen Z, Jin X, Li L, Speier W, Arnold CW | IEEE Journal of Biomedical and Health Informatics | 2021 | |
| A Machine Learning Approach to Predict Acute Ischemic Stroke Thrombectomy Reperfusion using Discriminative MR Image Features | Zhang H, Polson JS, Nael K, Salamon N, Yoo B, Kim N, Speier W, Arnold CW | Proceedings of the IEEE EMBS International Conference on Biomedical and Health Informatics (BHI) | 2021 | |
| A Semi-Supervised Learning Framework to Leverage Proxy Information for Stroke MRI Analysis | Polson JS, Zhang H, Nael K, Salamon N, Yoo B, Kim N, Kang D, Speier W, Arnold CW | Proceedings of the IEEE Engineering in Medicine and Biology Society (EMBC) Annual Meeting | 2021 | |
| Harnessing Clinical Annotations to Improve Deep Learning Performance in Prostate Segmentation | Sarma K, Raman AG, Dhinagar N, Priester A, Harmon S, Sanford T, Mehralivand S, Turkbey B, Marks L, Raman S, Speier W, Arnold CW | PLOS ONE | 2021 | |
| Intra-Domain Task-Adaptive Transfer Learning to Determine Acute Ischemic Stroke Onset Time | Zhang H*, Polson JS*, Nael K, Salamon N, Yoo B, El-Saden S, Scalzo F, Speier W, Arnold CW | Computerized Medical Imaging and Graphics | 2021 | |
| Bidirectional Representation Learning from Transformers using Multimodal Electronic Health Record Data to Predict Depression | Meng Y, Speier W, Ong M, Arnold CW | IEEE Journal of Biomedical and Health Informatics | 2021 |
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| Optimizing Spatial Biopsy Sampling for the Detection of Prostate Cancer | Raman AG*, Sarma KV*, Raman S, Priester A, Mirak S, Riskin-Jones H, Dhinagar N, Speier W, Felker E, Sisk A, Lu D, Kinnaird A, Reiter R, Marks L, Arnold CW | The Journal of Urology | 2021 |
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| A Multi-resolution Model for Histopathology Image Classification and Localization with Multiple Instance Learning | Li J, Li W, Sisk A, Ye H, Wallace W, Speier W, Arnold CW | Computers in Biology and Medicine | 2021 | |
| Federated Learning Improves Site Performance in Multi-Center Deep Learning Without Data Sharing | Sarma K, Harmon S, Sanford T, Roth H, Xu Z, Tetreault J, Xu D, Flores M, Raman A, Kulkarni R, Wood B, Choyke P, Priester A, Marks L, Raman S, Enzmann D, Turkbey B, Speier W, Arnold CW | Journal of the American Medical Informatics Association | 2021 | |
| Semi-automated PIRADS Scoring via mpMRI Analysis | Dhinagar N, Speier W, Sarma K,
Raman A, Kinnaird A, Raman S, Marks L, Arnold CW | SPIE Journal of Medical Imaging | 2020 | |
| Integrating Remote Monitoring into Heart Failure Patients' Care Regimen: A Pilot Study | Sohn A, Speier W, Lan E, Aoki K, Fonarow G, Ong M, Arnold CW | PLOS ONE | 2020 | |
| Biometric and Psychometric Remote Monitoring is Associated with Cardiovascular Risk Biomarkers in Ischemic Heart Disease | Shufelt C, Kim A, Joung S, Barsky L, Arnold CW, Cheng S, Dhawan S, Fuller G, Speier W, Lopez M, Mastali M, ouapi KN, van den Broek I, Wei J, Spiegel B, Van Eyk J, Bairey-Merz CN | Journal of the American Heart Association | 2020 |
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| Classifying Breast Histopathology Images with Ductal Instance-oriented Pipeline | Li B, Mercan E, Mehta S, Knezevich S, Arnold CW, Weaver D, Elmore J, Shapiro L | International Conference on Pattern Recognition | 2020 | |
Semi-supervised Learning using Adversarial Training with Good and Bad Samples
| Li W, Wang Z, Yue Y, Li J, Speier W, Zhou M, Arnold CW
| Machine Vision and Applications
| 2020
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HCET: Hierarchical Clinical Embedding with Topic Modeling on Electronic Health Records for Predicting Depression
| Meng Y, Speier W, Ong M, Arnold CW
| IEEE Journal of Biomedical and Health Informatics
| 2020
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Toward Heterogeneous Information Fusion: Bipartite Graph Convolutional Networks for In Silico Drug Repurposing
| Wang Z, Zhou M, Arnold CW
| Bioinformatics
| 2020
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An electronic form for reporting results of targeted prostate biopsy: Urology Integrated Diagnostic Report (Uro-IDR)
| Guorgui J, Kinnaird A, Jayadevan R, Priester A, Arnold CW, Marks LS
| Urology
| 2020
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LSTM Network for Prediction of Hemorrhagic Transformation in Acute Stroke
| Yu Y, Parsi B, Speier W, Arnold CW, Lou M, Scalzo F
| International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)
| 2019
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Assessment of Heart Failure Patients' Interest in Mobile Health Apps for Self-Care: Survey Study
| A Sohn, Speier W, Lan E, Aoki K, Fonarow G, Ong M, Arnold CW
| Journal of Medical Internet Research Cardio
| 2019
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A Machine Learning Approach to Classifying Self-Reported Health Status in a cohort of Patients with Heart Disease using Activity Tracker Data
| Meng Y, Speier W, Shufelt C, Joung S, Van Eyk JE, Bairey Merz CN, Lopez M, Spiegel B, Arnold CW
| IEEE Journal of Biomedical and Health Informatics
| 2019
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Estimating the Health-Related Quality of Life of Twitter Users Using Semantic Processing
| Sarma KV, Spiegel B, Reid M, Chen S, Merchant R, Seltzer E, Arnold CW
| Proc. of the International Medical Informatics Association 2019 Meeting (MEDINFO)
| 2019
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An Attention-Based Multi-Resolution Model for Prostate Whole Slide Image Classification and Localization
| Li J, Li W, Gertych A, Knudsen BS, Speier W, Arnold CW
| Conference on Computer Vision and Pattern Recognition (CVPR) Towards Causual, Explainable and Universal Medical Visual Diagnosis Workshop
| 2019
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Semi-Supervised Learning Based on Generative Adversarial Network: a Comparison Between Good GAN and Bad GAN Approach
| Li W, Wang Z, Li J, Polson J, Speier W, Arnold CW
| Conference on Computer Vision and Pattern Recognition (CVPR) Weakly Supervised Learning for Real-World Computer Vision Applications Workshop
| 2019
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Predicting Ischemic Stroke Tissue Fate Using a Deep Convolutional Neural Network on Source MR Perfusion Imaging
| Ho KC, Scalzo F, Sarma KV, Speier W, El-Saden S, Arnold CW
| Journal of Medical Imaging
| 2019
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A Machine Learning Approach for Classifying Ischemic Stroke Onset Time from Imaging
| Ho KC, Speier W, Zhang H, Scalzo F, El-Saden S, Arnold CW
| IEEE Transactions on Medical Imaging
| 2019
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Prediction of Clinically Significant Prostate Cancer in MR/Ultrasound Guided Fusion Biopsy using Multiparametric MRI
| Shi W, Sarma KV, Raman AG, Priester AM, Natarajan S, Speier W, Raman S, Marks L, Arnold CW
| Neural Information Processing Systems (NeurIPS) Medical Imaging Meets NeurIPS Workshop
| 2018
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Semi-supervised Rare Disease Detection Using Generative Adversarial Network
| Li W, Wang Y, Arnold CW, Zhao E, Yuan Y
| Neural Information Processing Systems (NeurIPS) Machine Learning for Health (ML4H) Workshop
| 2018
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Path R-CNN for Prostate Cancer Diagnosis and Gleason Grading of Histological Images
| Li W, Li J, Sarma KV, Ho KC, Shen S, Knudsen BS, Gertych A, Arnold CW
| IEEE Transactions on Medical Imaging
| 2018
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An EM-based Semi-supervised Deep Learning Approach for Semantic Segmentation of Histopathological Images from Radical Prostatectomies
| Li J, Speier W, Ho KC, Sarma KV, Gertych A, Knudsen B, Arnold CW
| Computerized Medical Imaging and Graphics
| 2018
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Evaluating Utility and Compliance in a Patient-based eHealth Study using Continuous-time Heart Rate and Activity Trackers.
| Speier W, Dzubur E, Zide M, Shufelt C, Joung S, Van Eyk JE, Merz CNB, Lopez M, Spiegel B, Arnold CW
| Journal of the American Medical Informatics Association
| 2018
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Semantic Segmentation for Prostate Cancer Grading by Convolutional Neural Networks
| Ing N, Ma Z, Li J, Salemi H, Arnold CW, Knudsen B, Gertych A
| SPIE Medical Imaging
| 2018
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A Multi-scale U-Net for Semantic Segmentation of Histological Images from Radical Prostatectomies
Finalist, Best Student Paper Award
| Li J, Sarma KV, Ho KC, Gertych A, Knudsen B, Arnold CW
| Proc. of the American Medical Informatics Association (AMIA) Annual Symposium
| 2017
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Classifying Acute Ischemic Stroke Onset Time using Deep Imaging Features
Winner, Best Student Paper Award
| Ho KC, Speier W, El-Saden S, Arnold CW
| Proc. of the American Medical Informatics Association (AMIA) Annual Symposium
| 2017
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Source-LDA: Enhancing Probabilistic Topic Models using Prior Knowledge Sources
| Wood J, Tan P, Das A, Wang W, Arnold CW
| Proc. of the IEEE International Conference on Data Engineering
| 2016
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A Temporal Deep Learning Approach for MR Perfusion Parameter Estimation in Stroke
| Ho KC, Scalzo F, Sarma K, El-Saden S, Arnold CW
| Proc. of the International Conference on Pattern Recognition
| 2016
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Using Phrases and Document Metadata to Improve Topic Modeling of Clinical Reports
| Speier W, Ong MK, Arnold CW
| Journal of Biomedical Informatics
| 2016
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Consumers' Patient Portal Preferences and Health Literacy: A Survey Using Crowdsourcing
| McNamara M, Caswell K, Peterson E, Aberle DR, Bui AAT, Arnold CW
| Journal of Medical Internet Research Research Protocols
| 2016
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Evaluating Topic Model Interpretability from a Primary Care Physician Perspective
| Arnold CW, Oh A, Chen X, Speier W
| Computer Methods and Programs in Biomedicine
| 2016
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RadPath: A Web-based System for Integrating and Correlating Radiology and Pathology Findings During Cancer Diagnosis
| Arnold CW, Wallace WD, Chen S, Oh A, Abtin F, Genshaft S, Binder S, Aberle D, Enzmann D
| Academic Radiology
| 2016
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Imaging-histologic Discordance at Percutaneous Biopsy of the Lung
| Oh A, Arnold CW, Vangala S, Wallace WD, Genshaft S, Sarma K, Aberle D
| Academic Radiology
| 2015
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| Patient Portal Preferences: Perspectives on Imaging Information | McNamara M, Arnold CW, Sarma K, Garon E, Aberle D, Bui AAT
| Journal of the Association for Information Science and Technology
| 2013
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Predicting Discharge Mortality after Acute Ischemic Stroke
Finalist, Best Student Paper Award | Ho KC, Speier W, El-Saden S, Liebeskind DS, Saver JL, Bui AAT, Arnold CW
| Proc. of the American Medical Informatics Association (AMIA) Annual Symposium
| 2014
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A Data Model for Personalized Patient Health Guidelines: An Exploratory Study
| McNamara M, Sarma K, Aberle D, Bui AAT, Arnold CW
| Proc. of the American Medical Informatics Association (AMIA) Annual Symposium
| 2014
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Imaging Informatics for Consumer Health: Towards a Radiology Patient Portal
| Arnold CW, McNamara M, Chen S, Taira R, Bui AAT
| Journal of the American Medical Informatics Association
| 2013
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A Topic Model of Clinical Reports
| Arnold CW, Speier W
| ACM Special Interest Group on Information Retrieval
| 2012
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Robust Skull Stripping of Clinical Glioblastoma Multiforme Data
| Speier W, Iglesias JE, El-Kara L, Tu Z, Arnold CW
| International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)
| 2011
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Clinical Case-based Retrieval using Latent Topic Analysis
| Arnold CW, El-Saden SM, Bui AAT, Taira RK
| Proc. of the American Medical Informatics Association (AMIA) Annual Symposium
| 2010
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